Population Genetic Structure of Marine Organisms within the Gulf of Thailand
Abstract
The main purpose of this study is to define subdivided populations and genetic differentiation among marine populations within the Gulf of Thailand. Reviews on population genetic structure in marine species within the Gulf of Thailand from 2003 up to now showed population genetic structure and genetic differentiation between the upper and lower Gulf of Thailand invertebrate populations such as surf clams, bean clams, giant tiger shrimps, Penaeid prawns and blue swimming crabs. These differentiations excluded a few mollusk species such as green mussels, oysters and Asian moon scallops. For vertebrate species e.g. fish, populations of Asian seabass, cobia and spotted seahorses showed no genetic differentiation except for the populations of short mackerels. Factors affecting genetic differentiation in some marine species within the Gulf of Thailand were the circulation in the Gulf of Thailand, distance between populations, and difference in some physical and biological factors. Keywords : population genetic structure, population genetics, genetic differentiation, Gulf of ThailandReferences
Aschariyaphotha, N., Wongwises, P., Wongwises, S., Humphries, W. U. & Xiaobao, Y. (2008). Simulation of seasonal circulations and thermohaline variabilities in the Gulf of Thailand. Advances in Atmospheric Sciences, 25(3), 489-506.
Benzie, J. A. H. (1992). Review of the genetics, dispersal and recruitment of Crown-of-thorns starfish (Acanthaster planci). Australian Journal of Marine and Freshwater Research, 43, 597-610.
Bleeker, P. (1851). Bijdrage tot de kennis der ichthyologische fauna van Borneo, met beschrijving van 16 nieuwe soorten van Zoetwaterfischen. Natuurkundig Tijdschrift voor Nederlandsch Indië, 1, 1-16.
Buranapratheprat, A. (2008). Circulation in the upper Gulf of Thailand: a review. Burapha Science Journal 13(1), 75-83.
Buranapratheprat, A. & Bunpapong, M. (1998). Two-dimensional hydrodynamic model of seasonal variation in circulation in the Gulf of Thailand. Aquatic Science Journal, 4(1-2), 27-39. (in Thai)
Bussarawit, S. & Simonsen, V. (2006). Genetic variation in populations of white scar (Crassostrea belcheri) and black scar oysters (C. iredalei) along the coast of Thailand by means of isozymes. Phuket Marine Biological Center Research Bulletin, 67, 11-21.
Chaiyapu, M. (2003). Taxonomy of pipefishes and seahorses (PISCES: SYNGNATHIDAE) found in Thai waters. MSc Thesis, Chulalongkorn University. (in Thai)
Donrung, P., Tunkijjanukij, S., Jarayabhand, P. & Poompuang, S. (2011). Spatial genetic structure of the surf clam Paphia undulata in Thailand waters. Zoological Studies, 50(2), 211-219.
Edgar, G. J. (1990). Predator-prey interactions in seagrass beds. II. Distribution and diet of the blue manna crab Portunus pelagicus Linnaeus at Cliff Head, Western Australia. Journal of Experimental Marine Biology and Ecology, 139, 23-32.
Hanebuth, T., Stattegger, K. & Grootes, P. M. (2000). Rapid flooding of the Sunda Shelf: a late-glacial sea level record. Science, 288, 1033-1035.
Haq, B. U., Hardenbol, J. & Vail, P. R. (1987). Chronology of fluctuating sea levels since the Triassic. Science, 235, 1156-1167.
Hellberg, M. E. (2009). Gene flow and isolation among populations of marine animals. Annual Review of Ecology and Systematics, 40, 291-310.
Jarayabhand, P., Jaraeontia, S., Srisaard, C. & Menasveta, P. (1994). Experiments on larviculture of Thai oyster species. Thai Journal of Aquatic Science, 1(1), 43-53.
Jitmahantakul, S. (2017). Geology of the Gulf of Thailand. Retrieved October 16, 2017, from http://www.geothai.net/gulf-of-thailand/ (in Thai)
Kangas, M. I. (2000). Synopsis of the biology and exploitation of the blue swimmer crab, Portunus pelagicus Linnaeus, in Western Australia. Fisheries Research Report, Fisheries Department (Western Australia), 121, 1-22.
Khamnamtong, B., Klinbunga, S. & Menasveta, P. (2009). Genetic diversity and geographic differentiation of the giant tiger shrimp (Penaeus monodon) in Thailand analyzed by mitochondrial COI sequences. Biochemical Genetics, 47, 42-55.
Khongchatee, A. (2011). Phylogeography of cobia (Rachycentron canadum) in Thailand. MSc Thesis, Walailak University.
Kijima, A. & Fujio, Y. (1990). Genetic analysis of population structure in marine teleost around Japan. In. Isozyme: Structure, Function, and Use in Biology and Medicine. (pp. 177-206). New York:
Wiley-Liss, Inc.
Klinbunga, S., Khetpu, K., Khamnamtong, B. & Menasveta, P. (2007). Genetic heterogeneity of the blue swimming crab (Portunus pelagicus) in Thailand determined by AFLP analysis. Biochemical Genetics, 45, 725-736.
Klinbunga, S., Siludjai, D., Wudthijinda, W., Tassanakajon, A., Jarayabhand, P. & Menasveta, P. (2001). Genetic heterogeneity of the giant tiger shrimp (Penaeus monodon) in Thailand revealed by RAPD and mitochondrial DNA RFLP analyses. Marine Biotechnology, 3, 428-438.
Klinbunga, S., Yuvanatemiya, V., Wongphayak, S., Khetpu, K., Menasveta, P. & Khamnamtong, B. (2010). Genetic population differentiation of the blue swimming crab Portunus pelagicus (Portunidae) in Thai waters revealed by RAPD analysis. Genetics and Molecular Research, 9(3), 1615-1624.
Lourie, S. A., Green, D. M. & Vincent, A. C. J. (2005). Dispersal, habitat differences, and comparative phylogeography of Southeast Asian seahorses (Syngnathidae: Hippocampus). Molecular Ecology, 14, 1073-1094.
Mahidol, C., Na-Nakorn, U., Sukmanomon, S., Taniguchi, N. & Nguyen, T. T. T. (2007). Mitochondrial DNA diversity of the Asian moon scallop, Amusium pleuronectes (Pectinidae), in Thailand. Marine Biotechnology, 9, 352-359.
Manatrinon, S., Thonglor, O.-U. & Boonyapakdee, A. (2012). Genetic and morphological variation in three populations of Donax spp. in the Gulf of Thailand. Thai Journal of Genetics, 5(1), 79-88.
McManus, J. W. (1985). Marine speciation, tectonics and sea level changes in Southeast Asia. In. Fifth International Coral Reef Congress, Tahiti. (pp. 133-138).
Morton, N. (1980). Swimming in Amusium pleuronectes (Bivalvia: Pectinidae). Journal of Zoology, 190,
375-404.
Munpholsri, N. (2014). Development of microsatellite markers and their application in population genetics studies of short mackerel Rastrelliger brachysoma (Bleeker, 1851) and Indian mackerel R. Kanagurta (Cuvier, 1816). MSc Thesis, Kasetsart University. (in Thai)
Naiyanetr, P. (1998). Checklist of the Crustacean Fauna in Thailand (Decapoda and Stomatopoda). Bangkok: Office of Environmental Policy and Planning Biodiversity.
Nugranad, J. (1990). Population Dynamics of the Asian Moon Scallop (Amusium pleuronectes, Linn) Around the Chang Islands, Trat Province. MSc Thesis, Chulalongkorn University.
Panithanarak, T., Karuwancharoen, R., Na-Nakorn, U. & Nguyen, T. T. T. (2010). Population genetics of the spotted seahorse (Hippocampus kuda) in Thai waters: implications for conservation. Zoological Studies, 49(4), 564-576.
Phinchongsakuldit, J., Chaipakdee, P., Collins, J. F., Jaroensutasinee, M. & Brookfield, J. F. Y. (2013). Population genetics of cobia (Rachycentron canadum) in the Gulf of Thailand and Andaman Sea: fisheries management implications. Aquaculture International, 21, 197-217.
Prakoon, W., Tunkijjanukij, S., Nguyen, T. T. T. & Na-Nakorn, U. (2010). Spatial and temporal genetic variation of green mussel, Perna viridis in the Gulf of Thailand and implication for aquaculture. Marine Biotechnology, 12, 506-515.
Rajagopal, S., Venugopalan, V. P., Nair, K. V. K., Van der Velde, G., Jenner, H. A. & Den, H. (1998). Reproduction, growth rate and culture potential of the green mussel, Perna viridis (L.) in Edaiyur backwaters, East coast of India. Aquaculture, 162, 187-202.
Roongratri, M. (1996). Biology of the Asian Moon Scallop (Amusium pleuronectes, Linn) in Royong Bay, Rayong Province. Rayong: Eastern Marine Fisheries Development Center, Department of Fisheries, Ministry of Agriculture and Cooperatives.
Shaffer, R. & Nakamura, E. (1989). Synopsis of biological data on the cobia, Rachycentron canadum (Pisces: Racycentridae). Seattle, Washington DC: U.S. Department of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service.
Sodsuk, P. K., Praipanapong, S., Sain-in, N., Sodsuk, S. & Pewnain, P. (2012). Microsatellite-based analysis of genetic variation in hatchery populations of Asian seabass, Lates calcarifer (BLOCH, 1790). Thai Journal of Genetics 5(2), 166-182. (in Thai)
Srinulgray, T. (2008). Genetic diversity of short mackerel Rastrelliger brachysoma populations in the Gulf of Thailand and Andaman Sea. MSc Thesis, Chulalongkorn University.
Sutthakorn, P. & Tuaycharoen, S. (1993). Biological aspects of short necked clam Paphia undulata (Born, 1778) off the west coast of Thailand. Phuket: Marine Life History Unit, Andaman Sea Fisheries Research and Development Center, Marine Fisheries Division, Department of Fisheries.
Tassanakajon, A. (2003). Genetic diversity and population structure of the black tiger shrimp, Penaeus monodon, in Thailand revealed by microsatellite markers. Journal of Research Methodology, 16(3), 359-373. (in Thai)
Tassanakajon, A., Pongsomboon, S., Rimpanitchayakit, V., Jarayabhand, P. & Boonsaeng, V. (1997). Random amplified polymorphic DNA (RAPD) markers for determination of genetic variation in wild populations of the black tiger prawn (Penaeus monodon) in Thailand. Molecular Marine Biology and Biotechnology, 6, 110-115.
Voris, H. K. (2000). Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems, time durations. Journal of Biogeography, 27, 1153-1167.
Wangvoralak, S., Kaewnoen, M., Ajjimangkool, S. & Srisomvongse, C. (2006). Study on culture pattern, using of woods and cost-benefit analysis in green mussel (Perna viridis) culture: a case study in Chachoengsao and Surat Thani province. In. Proceedings of 44th Kasetsart University Annual Conference: Fisheries Section. (pp. 501-509). Bangkok: Kasetsart University.
Wanna, W., Rolland, J.-L., Bonhomme, F. & Phongdara, A. (2004). Population genetic structure of Penaeus merguiensis in Thailand based on nuclear DNA variation. Journal of Experimental Marine Biology and Ecology, 311, 63-78.
Benzie, J. A. H. (1992). Review of the genetics, dispersal and recruitment of Crown-of-thorns starfish (Acanthaster planci). Australian Journal of Marine and Freshwater Research, 43, 597-610.
Bleeker, P. (1851). Bijdrage tot de kennis der ichthyologische fauna van Borneo, met beschrijving van 16 nieuwe soorten van Zoetwaterfischen. Natuurkundig Tijdschrift voor Nederlandsch Indië, 1, 1-16.
Buranapratheprat, A. (2008). Circulation in the upper Gulf of Thailand: a review. Burapha Science Journal 13(1), 75-83.
Buranapratheprat, A. & Bunpapong, M. (1998). Two-dimensional hydrodynamic model of seasonal variation in circulation in the Gulf of Thailand. Aquatic Science Journal, 4(1-2), 27-39. (in Thai)
Bussarawit, S. & Simonsen, V. (2006). Genetic variation in populations of white scar (Crassostrea belcheri) and black scar oysters (C. iredalei) along the coast of Thailand by means of isozymes. Phuket Marine Biological Center Research Bulletin, 67, 11-21.
Chaiyapu, M. (2003). Taxonomy of pipefishes and seahorses (PISCES: SYNGNATHIDAE) found in Thai waters. MSc Thesis, Chulalongkorn University. (in Thai)
Donrung, P., Tunkijjanukij, S., Jarayabhand, P. & Poompuang, S. (2011). Spatial genetic structure of the surf clam Paphia undulata in Thailand waters. Zoological Studies, 50(2), 211-219.
Edgar, G. J. (1990). Predator-prey interactions in seagrass beds. II. Distribution and diet of the blue manna crab Portunus pelagicus Linnaeus at Cliff Head, Western Australia. Journal of Experimental Marine Biology and Ecology, 139, 23-32.
Hanebuth, T., Stattegger, K. & Grootes, P. M. (2000). Rapid flooding of the Sunda Shelf: a late-glacial sea level record. Science, 288, 1033-1035.
Haq, B. U., Hardenbol, J. & Vail, P. R. (1987). Chronology of fluctuating sea levels since the Triassic. Science, 235, 1156-1167.
Hellberg, M. E. (2009). Gene flow and isolation among populations of marine animals. Annual Review of Ecology and Systematics, 40, 291-310.
Jarayabhand, P., Jaraeontia, S., Srisaard, C. & Menasveta, P. (1994). Experiments on larviculture of Thai oyster species. Thai Journal of Aquatic Science, 1(1), 43-53.
Jitmahantakul, S. (2017). Geology of the Gulf of Thailand. Retrieved October 16, 2017, from http://www.geothai.net/gulf-of-thailand/ (in Thai)
Kangas, M. I. (2000). Synopsis of the biology and exploitation of the blue swimmer crab, Portunus pelagicus Linnaeus, in Western Australia. Fisheries Research Report, Fisheries Department (Western Australia), 121, 1-22.
Khamnamtong, B., Klinbunga, S. & Menasveta, P. (2009). Genetic diversity and geographic differentiation of the giant tiger shrimp (Penaeus monodon) in Thailand analyzed by mitochondrial COI sequences. Biochemical Genetics, 47, 42-55.
Khongchatee, A. (2011). Phylogeography of cobia (Rachycentron canadum) in Thailand. MSc Thesis, Walailak University.
Kijima, A. & Fujio, Y. (1990). Genetic analysis of population structure in marine teleost around Japan. In. Isozyme: Structure, Function, and Use in Biology and Medicine. (pp. 177-206). New York:
Wiley-Liss, Inc.
Klinbunga, S., Khetpu, K., Khamnamtong, B. & Menasveta, P. (2007). Genetic heterogeneity of the blue swimming crab (Portunus pelagicus) in Thailand determined by AFLP analysis. Biochemical Genetics, 45, 725-736.
Klinbunga, S., Siludjai, D., Wudthijinda, W., Tassanakajon, A., Jarayabhand, P. & Menasveta, P. (2001). Genetic heterogeneity of the giant tiger shrimp (Penaeus monodon) in Thailand revealed by RAPD and mitochondrial DNA RFLP analyses. Marine Biotechnology, 3, 428-438.
Klinbunga, S., Yuvanatemiya, V., Wongphayak, S., Khetpu, K., Menasveta, P. & Khamnamtong, B. (2010). Genetic population differentiation of the blue swimming crab Portunus pelagicus (Portunidae) in Thai waters revealed by RAPD analysis. Genetics and Molecular Research, 9(3), 1615-1624.
Lourie, S. A., Green, D. M. & Vincent, A. C. J. (2005). Dispersal, habitat differences, and comparative phylogeography of Southeast Asian seahorses (Syngnathidae: Hippocampus). Molecular Ecology, 14, 1073-1094.
Mahidol, C., Na-Nakorn, U., Sukmanomon, S., Taniguchi, N. & Nguyen, T. T. T. (2007). Mitochondrial DNA diversity of the Asian moon scallop, Amusium pleuronectes (Pectinidae), in Thailand. Marine Biotechnology, 9, 352-359.
Manatrinon, S., Thonglor, O.-U. & Boonyapakdee, A. (2012). Genetic and morphological variation in three populations of Donax spp. in the Gulf of Thailand. Thai Journal of Genetics, 5(1), 79-88.
McManus, J. W. (1985). Marine speciation, tectonics and sea level changes in Southeast Asia. In. Fifth International Coral Reef Congress, Tahiti. (pp. 133-138).
Morton, N. (1980). Swimming in Amusium pleuronectes (Bivalvia: Pectinidae). Journal of Zoology, 190,
375-404.
Munpholsri, N. (2014). Development of microsatellite markers and their application in population genetics studies of short mackerel Rastrelliger brachysoma (Bleeker, 1851) and Indian mackerel R. Kanagurta (Cuvier, 1816). MSc Thesis, Kasetsart University. (in Thai)
Naiyanetr, P. (1998). Checklist of the Crustacean Fauna in Thailand (Decapoda and Stomatopoda). Bangkok: Office of Environmental Policy and Planning Biodiversity.
Nugranad, J. (1990). Population Dynamics of the Asian Moon Scallop (Amusium pleuronectes, Linn) Around the Chang Islands, Trat Province. MSc Thesis, Chulalongkorn University.
Panithanarak, T., Karuwancharoen, R., Na-Nakorn, U. & Nguyen, T. T. T. (2010). Population genetics of the spotted seahorse (Hippocampus kuda) in Thai waters: implications for conservation. Zoological Studies, 49(4), 564-576.
Phinchongsakuldit, J., Chaipakdee, P., Collins, J. F., Jaroensutasinee, M. & Brookfield, J. F. Y. (2013). Population genetics of cobia (Rachycentron canadum) in the Gulf of Thailand and Andaman Sea: fisheries management implications. Aquaculture International, 21, 197-217.
Prakoon, W., Tunkijjanukij, S., Nguyen, T. T. T. & Na-Nakorn, U. (2010). Spatial and temporal genetic variation of green mussel, Perna viridis in the Gulf of Thailand and implication for aquaculture. Marine Biotechnology, 12, 506-515.
Rajagopal, S., Venugopalan, V. P., Nair, K. V. K., Van der Velde, G., Jenner, H. A. & Den, H. (1998). Reproduction, growth rate and culture potential of the green mussel, Perna viridis (L.) in Edaiyur backwaters, East coast of India. Aquaculture, 162, 187-202.
Roongratri, M. (1996). Biology of the Asian Moon Scallop (Amusium pleuronectes, Linn) in Royong Bay, Rayong Province. Rayong: Eastern Marine Fisheries Development Center, Department of Fisheries, Ministry of Agriculture and Cooperatives.
Shaffer, R. & Nakamura, E. (1989). Synopsis of biological data on the cobia, Rachycentron canadum (Pisces: Racycentridae). Seattle, Washington DC: U.S. Department of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service.
Sodsuk, P. K., Praipanapong, S., Sain-in, N., Sodsuk, S. & Pewnain, P. (2012). Microsatellite-based analysis of genetic variation in hatchery populations of Asian seabass, Lates calcarifer (BLOCH, 1790). Thai Journal of Genetics 5(2), 166-182. (in Thai)
Srinulgray, T. (2008). Genetic diversity of short mackerel Rastrelliger brachysoma populations in the Gulf of Thailand and Andaman Sea. MSc Thesis, Chulalongkorn University.
Sutthakorn, P. & Tuaycharoen, S. (1993). Biological aspects of short necked clam Paphia undulata (Born, 1778) off the west coast of Thailand. Phuket: Marine Life History Unit, Andaman Sea Fisheries Research and Development Center, Marine Fisheries Division, Department of Fisheries.
Tassanakajon, A. (2003). Genetic diversity and population structure of the black tiger shrimp, Penaeus monodon, in Thailand revealed by microsatellite markers. Journal of Research Methodology, 16(3), 359-373. (in Thai)
Tassanakajon, A., Pongsomboon, S., Rimpanitchayakit, V., Jarayabhand, P. & Boonsaeng, V. (1997). Random amplified polymorphic DNA (RAPD) markers for determination of genetic variation in wild populations of the black tiger prawn (Penaeus monodon) in Thailand. Molecular Marine Biology and Biotechnology, 6, 110-115.
Voris, H. K. (2000). Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems, time durations. Journal of Biogeography, 27, 1153-1167.
Wangvoralak, S., Kaewnoen, M., Ajjimangkool, S. & Srisomvongse, C. (2006). Study on culture pattern, using of woods and cost-benefit analysis in green mussel (Perna viridis) culture: a case study in Chachoengsao and Surat Thani province. In. Proceedings of 44th Kasetsart University Annual Conference: Fisheries Section. (pp. 501-509). Bangkok: Kasetsart University.
Wanna, W., Rolland, J.-L., Bonhomme, F. & Phongdara, A. (2004). Population genetic structure of Penaeus merguiensis in Thailand based on nuclear DNA variation. Journal of Experimental Marine Biology and Ecology, 311, 63-78.
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2017-10-30
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